Nature Methods on Twitter: "Avant-garde: a tool for refining DIA-mass spectrometry data. @JaffeLab https://t.co/zIWJ9PUYiz… "
Simultaneous Improvement in the Precision, Accuracy, and Robustness of Label-free Proteome Quantification by Optimizing Data Manipulation Chains | Molecular & Cellular Proteomics
DIA mass spectrometry | Nature Methods
Hybrid Spectral Library Combining DIA-MS Data and a Targeted Virtual Library Substantially Deepens the Proteome Coverage - ScienceDirect
General workflows for processing DIA spectra. (A) Generation of... | Download Scientific Diagram
Mass spectrometry and proteomics
Group-DIA: analyzing multiple data-independent acquisition mass spectrometry data files | Nature Methods
Machine Learning in Mass Spectrometric Analysis of DIA Data - Xu - - PROTEOMICS - Wiley Online Library
In silico spectral libraries by deep learning facilitate data-independent acquisition proteomics | Nature Communications
Mass-spectrometric exploration of proteome structure and function | Nature
Robust, reproducible and quantitative analysis of thousands of proteomes by micro-flow LC–MS/MS | Nature Communications
Assessing the Relationship Between Mass Window Width and Retention Time Scheduling on Protein Coverage for Data-Independent Acquisition | SpringerLink
SWATH mass spectrometry as a tool for quantitative profiling of the matrisome - ScienceDirect
Data-independent acquisition mass spectrometry (DIA-MS) for proteomic applications in oncology - Molecular Omics (RSC Publishing) DOI:10.1039/D0MO00072H
CompMS | MS-DIAL
Optimization of Experimental Parameters in Data-Independent Mass Spectrometry Significantly Increases Depth and Reproducibility
Deep learning enables de novo peptide sequencing from data-independent-acquisition mass spectrometry | Nature Methods
SWATH-MS – Institute of Molecular Systems Biology | ETH Zurich
Quantitative Proteome Landscape of the NCI-60 Cancer Cell Lines - ScienceDirect
Chromatogram libraries improve peptide detection and quantification by data independent acquisition mass spectrometry | Nature Communications
Mass spectrometry and proteomics
In silico spectral libraries by deep learning facilitate data-independent acquisition proteomics | Nature Communications
PulseDIA: in-depth data independent acquisition mass spectrometry using enhanced gas phase fractionation | bioRxiv
